genefish:soap Steven$ ./SOAPdenovo31mer all -s config -o test3
Version 1.05: released on July 29th, 2010
pregraph -s config -o test3
In config, 1 libs, max seq len 40, max name len 256
8 thread created
read from file:
Olurida_trans_v2_trlib.fastq
--- 100000000th reads
----
whale/soap
config file..
max_rd_len=40
[LIB]
rank=1
q=Olurida_trans_v2_trlib.fastq
Killed job on genefish.
----
NOTE that this has worked with partial read file.
----
reboot 12/14/12
code:
genefish:soap Steven$ ./SOAPdenovo31mer all -s config -o OlyOv3
Version 1.05: released on July 29th, 2010
pregraph -s config -o OlyOv3
In config, 1 libs, max seq len 40, max name len 256
8 thread created
read from file:
Olurida_trim_nodups_v2reads
----
#fail
changed code
config file:
max_rd_len=40
[LIB]
rank=1
f=Olurida_trim_nodups_v2reads
basicContigInfo: 3655938 vs 4546043
basicContigInfo: 3655940 vs 4546045
basicContigInfo: 3655941 vs 4546047
Segmentation fault: 11
genefish:soap Steven$
Data
with 400bp Minimum
